西田研究室の業績
西田のWeb of Science
西田のScopus h-index=45, 5494 total citations |
西田のOrchid |
ResearchGate |
Reviews etc. * 著書 * 和文総説 * 発表論文
Reviews etc.
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Negishi, T. and Nishida, H.
Asymmetric and unequal cell divisions in ascidian embryos.
Asymmetric Cell Division in Development, Differentiation and Cancer in Results and Problems in Cell Differentiation(2017) (Springer) 61, 261-284. doi: 10.1007/978-3-319-53150-2_12.
Yamada, A., and Nishida, H.
Control of the number of cell division rounds in distinct tissues during ascidian embryogenesis.
Dev. Growth Differ. (2014) 56(5):376-86.
Nishida, H and Stach, T.
Cell lineages and fate maps in tunicates: Conservation and modification.
Zool. Sci. (2014) 31(10):645-52.
Nishida, H.
The maternal muscle determinant in the ascidian egg.
WIREs Dev. Biol. (2012). 1, 425-433.
Makabe, K., and Nishida, H.
Cytoplasmic localization and reorganization in ascidian eggs: Role of postplasmic/PEM RNAs in axis formation and fate determination.
WIREs Dev. Biol.(2012). 1, 501-518.
G.Kumano.
Polarizing animal cells via mRNA localization in oogenesis and early development.
Dev. Growth Differ.(2011) 54, 1-18.
Nishida, H., Satoh, N., and Hirose, E.
More diversity and more convergence in tunicate biology.
Zool. Sci.(2010) 27, 67-68.
Sardet, C., Swalla, B. J., Satoh, N., Sasakura, Y., Branno, M., Thompson, E. M., Levine, M., and Nishida, H.
Meeting review. Euro chordates: Ascidian community swims ahead.
Dev. Dynam.(2008) 237, 1207-1213.
Nishida, H.
Development of the appendicularian Oikopleura dioica: culture, genome, and cell lineages.
Dev. Growth Differ. (2008) 50, S239-S256.
Lemaire, P., Smith, W. C., and Nishida, H.
Ascidians and the plasticity of the chordate developmental program.
Curr. Biol.(2008) 18, R620-R631.
- Kumano G, Nishida H.
- Ascidian embryonic development: An emerging model system for the study of cell fate specification in chordates.
- Developmental Dynamics(2007). 236, 1732-1747.
- Nishida H
- Review: Specification of embryonic axis and mosaic development in ascidians.
- Dev Dyn. (2005) Aug;233(4):1177-93.
- Nishida, H.
- Review: The zoological society prize: Analysis of cell fate specification during ascidian early embryogenesis
- Zool. Sci. 20:1495-1496 (2003)
- Kumano, G. and Smith, W. C.
- Revisions to the Xenopus gastrula fate map: implications for mesoderm induction and patterning.
- Dev. Dyn. (2002). 225, 409-421.
- Nishida, H.
- Review: Patterning the marginal zone of early ascidian embryos: Localized maternal mRNA and inductive interactions
- BioEssays 24:613-624 (2002)
- Nishida, H.
- Review: Specification of developmental fates in ascidian embryos: Recent advances in molecular approach to maternal determinants and signaling molecules
- Int. Rev. Cytol. 217,227-76 (2002)
- Nishida, H., Morokuma, J., Nishikata, T.
- Review: Maternal cytoplasmic factors for generation of unequal cleavage patterns in animal embryos
- Curr. Top. in Dev. Biol. 46, 1-37 (1999)
- Nishida, H., Makabe, KW.
- Proceeding: Maternal information and localized maternal mRNA in eggs and early embryos of the ascidian Halocynthia roretzi
- Invert. Rep. and Dev. 36, 41-49 (1999)
- Nishida, H.
- Review: Cell lineage and timing of fate restriction, determination and gene expression in ascidian embryos
- Seminars in Cell and Developmental Biology 8, 359-365 (1997)
- Nishida, H.
- Review: Cell-fate specification by localized cytoplasmic determinants and cell interactions in ascidian embryos
- International Review of Cytology 176, 245-306 (1997)
- Nishida, H.
- Essay: Determination at the last cell cycle before fate restriction
- Zool. Sci. 13, 15-20 (1996)
- Nishida, H.
- Review: Determination of developmental fates of blastomeres in ascidian embryos
- Dev. Growth Differ. 34, 253-262 (1992)
著書
- 西田・EG記(単著、1995)
- すべては卵から始まる(岩波書店)
- 西田宏記(共著、2010)
- 細胞周期フロンティア(共立出版)
- 西田宏記(共著、2009)
- 研究をささえるモデル生物(化学同人)
- 西田宏記(共著、2007)
- 神経系の多様性:その起源と進化(培風館)
- 西田宏記(共著、2002)
- 生物学データ大百科事典(下)(朝倉書店)
- 西田宏記(共著、2001)
- たった一つの卵から - 発生現象の不思議(東京化学同人)
- 西田宏記(共著、1998)
- ホヤの生物学(東京大学出版会)
- 西田宏記(共著、1997)
- 知覚のセンサー - 生物の巧みなシグナルのやりとり(吉岡書店)
- 西田宏記(共著、1996)
- 英語論文セミナー 現代の発生生物学(講談社サイエンティフィク)
- 西田宏記(共著、1990)
- 岩波講座 分子生物科学 8巻、個体の生涯I(岩波書店)
- 西田宏記(共著、1989)
- シリーズ分子生物学の進歩 8巻、細胞コミュニティーの形成(丸善)
和文総説
- 小沼健, 松尾正樹, 西田宏記
- オタマボヤの発生学を開拓する:「単純な体の脊索動物」という個性を活かす試み
- 実験医学 36 (6)巻 pp.1021-1025 (2018.4)
- 小沼健, 塚田かすみ, 西田宏記
- 二本鎖DNAによる新規の遺伝子ノックダウン現象 (DNAi): ガイド鎖と核酸分解酵素Argonauteからそのしくみに迫る
- 日本応用酵素協会誌 52巻 pp.11-18 (2018.3)
- 松尾正樹, 表迫竜也, 小沼健, 西田宏記
- 脊索動物ワカレオタマボヤを用いたDNAiによる母性因子の機能的スクリーニング
- 比較内分泌学 162巻 pp.136-137 (2017.10)
- 岸香苗, 西田宏記, 小沼健
- 実験動物紹介: ワカレオタマボヤ
- 比較内分泌学 157巻 pp.1-4 (2016.2)
- 表迫竜也, 西田宏記, 小沼健
- 脊索動物ワカレオタマボヤにおける2つの遺伝子サイレンシング機構: RNA interferenceとDNA interference
- 比較内分泌学 157巻 pp.5-7 (2016.2)
- 西田宏記、沢田佳一郎
- ホヤ胚発生過程における中胚葉パターニング
- - 筋肉、脊索、間充織の形成機構 -
- 細胞工学 21巻1号 pp.98-105(2002)
- 西田宏記、沢田佳一郎
- macho-1はホヤ胚発生において筋肉への発生運命を決定する
- 実験医学 19巻5号 pp.879-882 (2001)
- 西方敬人、西田宏記
- 初期発生における不等分裂のしくみ
- 細胞工学 15巻12号 pp.1687-1697 (1996)
- 西田宏記
- ホヤの胚発生の普遍性と特殊性
- 遺伝 50巻12号 pp.12-17 (1996)
- 堀沢子、西田宏記
- ホヤの眼と耳はどうやって決まるか? - 発生における等価群 -
- 生物物理 36巻3号 pp.139-143 (1996)
- 西田宏記 (共著、1996)
- 英語論文セミナ− 現代の発生生物学 (講談社サイエンティフィク)
発表論文
- Nishida, H. Y., Hamada, K., Koshita, M., Ohta, Y., and Nishida, H.
- Ascidian gastrulation and blebbing activity of isolated endoderm blastomeres.
- Dev. Biol. (2023) 496, 24-35. doi: 10.1016/j.ydbio.2023.01.007.
- Nishida, H., Matsuo, M., Konishi, S., Ohno, N., Manni, L., and Onuma T.A.
- Germline development during embryogenesis of the larvacean, Oikopleura dioica.
- Dev. Biol. (2022) 481, 188-200. doi: 10.1016/j.ydbio.2021.10.009.
- Onuma, T. A. and Nishida, H.
- Developmental biology of the larvacean Oikopleura dioica : Genome resources, functional screening, and imaging.
- Dev. Growth Differ. (2022) 64, 67-82. doi: 10.1111/dgd.12769.
- Marti-Solans, J., Godoy, H., Diaz-Gracia, M., Onuma, T., Nishida, H., Albalat R., and Canestro, C.
- Massive Gene Loss and Function Shuffling in Appendicularians Stretch the Boundaries of Chordate Wnt Family Evolution.
- Frontiers Cell Dev. Biol. (2021) 9, 700827. doi: 10.3389/fcell.2021.700827.
- Nishida, H., Ohno, N., Caicci, F., and Manni, L.
- 3D reconstruction of structures of hatched larva and young juvenile of the larvacean Oikopleura dioica using SBF-SEM.
- Scientific Reports (2021) 11, 4833. doi: 10.1038/s41598-021-83706-y.
- Shih, Y., Wang, K., Kumano, G., and Nishida, H.
- Expression and functional analyses of ectodermal transcription factors FoxJ-r, SoxF, and SP8/9 in early embryos of the ascidian Halocynthia roretzi.
- Zoological Science (2021) 38, 26-35. doi: 10.2108/zs200128.
- Coulcher, J. F., Roure, A., Chowdhury, R., Robert, M., Lescat, L., Bouin, A., Cadavid, J. C., Nishida, H., and Darras, S.
- Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos.
- eLIFE (2020) 9, e59157. doi: 10.7554/eLife.59157.
- Morita, R., Onuma, T.A., Manni, L., Ohno, N., Nishida, H.
- Mouth opening is mediated by separation of dorsal and ventral daughter cells of the lip precursor cells in the larvacean, Oikopleura dioica.
- Dev. Genes Evol. (2020) 230, 315?327. doi: 10.1007/s00427-020-00667-4
- Wang, K., Tomura, R., Chen, W., Kiyooka, M., Ishizaki, H., Aizu, T., Minakuchi, Y., Seki, M., Suzuki, Y., Omotezako, T., Suyama, R., Masunaga, A., Plessy, C., Luscombe, N.M., Dantec, C., Lemaire, P., Itoh, T., Toyoda, A., Nishida, H., and Onuma, T.A.,
- A genome database for a Japanese population of the larvacean Oikopleura dioica.
- Dev. Growth Differ. (2020) 62, 450-461. doi: 10.1111/dgd.12689.
- Onuma, T.A., Hayashi, M., Gyoja, F., Kishi, K., Wang, K., Nishida, H.
- A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
- Proc. Natl. Acad. Sci. USA. (2020) 117, 4188-4198. doi: 10.1073/pnas.1916858117.
- Matsuo, M., Onuma, T.A., Omotezako, T., Nishida, H.
- Protein phosphatase 2A is essential to maintain meiotic arrest, and to prevent Ca2+ burst at spawning and eventual parthenogenesis in the larvacean Oikopleura dioica.
- Dev. Biol. (2020) 460, 155-163. doi: 10.1016/j.ydbio.2019.12.005.
- Dardaillon, J., Dauga, D., Simion, P., Faure, E., Onuma, T.A., DeBiasse, M.B., Louis, A., Nitta, K.R., Naville, M., Besnardeau, L., Reeves, W., Wang, K., Fagotto, M., Gueroult-Bellone, M., Fujiwara S, Dumollard R, Veeman M, Volff JN, Roest Crollius H, Douzery E, Ryan JF, Davidson, B., Nishida, H., Dantec, C., Lemaire, P.
- ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.
- Nucleic Acids Res. (2020) 48, D668-D675. doi: 10.1093/nar/gkz955.
- Tanaka, Y., Yamada, S., Connop, S. L., Hashii, N., Sawada, H., Shih, Y., and Nishida, H.
- Vitelline membrane proteins promote left-sided nodal expression after neurula rotation in the ascidian, Halocynthia roretzi.
- Dev. Biol. Biol. (2019) 449, 52-61. doi: 10.1016/j.ydbio.2019.01.016
- Yamada, S., Tanaka, Y., Imai, K.S., Saigou, M., Onuma, T.A., and Nishida, H.
- Wavy movements of epidermis monocilia drive the neurula rotation that determines left?right asymmetry in ascidian embryos.
- Dev. Biol. (2019) 448, 173-182. doi: 10.1016/j.ydbio.2018.07.023
- Somorjai, I. M. L., Marti-Solans, J., Diaz-Gracia, M., Nishida, H., Imai, K. S., Escriva, H., Canestro, C., and Albalat, R.
- Wnt evolution and function shuffling in liberal and conservative chordate genomes.
- Genome Biology (2018) 19, 98. doi: 10.1186/s13059-018-1468-3
- Miyaoku, K., Nakamoto, A., Nishida, H., and Kumano, G.
- Control of Pem protein level by localized maternal factors for transcriptional regulation in the germline of the ascidian, Halocynthia roretzi.
- PLOS ONE (2018) 13,e0196500. doi: 10.1371/journal.pone.0196500
- Brozovic, M., Dantec, C., Dardaillon, J., Dauga, D., Faure, E., Gineste, M., Louis, A., Naville, M., Nitta, K. R., Piette, J., Reeves, W., Scornavacca, C., Simion, P., Vincentelli, R., Bellec, M., Aicha, S, B., Fagotto, M., Gueroult-Bellone, M., Haeussler, M., Jacox, E., Lowe, E. K., Mendez, M., Roberge, A., Stolfi, A., Yokomori, R., Brown. T., Cambillau, C., Christiaen, L., Delsuc, F., Douzery, E., Dumollard, R., Kusakabe, T., Nakai, K., Nishida, H., Satou, Y., Swalla, B., Veeman, M., Volff, J-N., and Lemaire, P.
- ANISEED 2017: Extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
- Nucleic Acids Res. (2018) 46, D718–D725. doi: 10.1093/nar/gkx1108 .
- Onuma, T. A., Matsuo, M., and Nishida, H.
- Modified whole-mount in situ hybridisation and immunohistochemistry protocols without removal of the vitelline membrane in the appendicularian Oikopleura dioica.
- Dev. Genes Evol. (2017) 227, 367–374. doi: 10.1007/s00427-017-0588-1 .
- Kishi, K., Hayashi, M., Onuma, T. A., Nishida, H.
- Patterning and morphogenesis of the intricate but stereotyped oikoplastic epidermis of the appendicularian, Oikopleura dioica.
- Dev. Biol. (2017) 428, 245-257. doi: 10.1016/j.ydbio.2017.06.008.
- Wang, K., Dantec, C., Lemaire, P., Onuma, T. A., and Nishida, H.
- Genome-wide survey of miRNAs and their evolutionary history in the ascidian, Halocynthia roretzi.
- BMC Genomics (2017) 18, 314. doi: 10.1186/s12864-017-3707-5.
- Omotezako, T., Matsuo, M., Onuma, T. A., and Nishida, H.
- DNA interference-mediated screening of maternal factors in the chordate Oikopleura dioica.
- Scientific Reports (2017) 7, 44226. dio:10.1038/srep44226 .
- Tokuhisa, M., Muto, M., and Nishida, H.
- Eccentric position of the germinal vesicle and cortical flow during oocyte maturation specify the animal-vegetal axis of ascidian embryos.
- Development (2017) 144, 897-904. doi:10.1242/dev.146282 .
- Onuma, T.A., Isobe, M., and Nishida, H.
- Internal and external morphology of adults of the appendicularian, Oikopleura dioica: an SEM study.
- Cell and Tissue Research (2017) 367,
213-227. doi: 10.1007/s00441-016-2524-5 .
- Kodama, H., Miyata, Y., Kuwajima, M., Izuchi, R., Kobayashi, A., Gyoja, F., Onuma, T.A., Kumano, G., Nishida, H.
- Redundant mechanisms are involved in suppression of default cell fates during embryonic mesenchyme and notochord induction in ascidians.
- Dev. Biol. (2016) 416, 162–172. doi:
10.1016/j.ydbio.2016.05.033.
- Brozovic, M., Martin, C., Dantec, C., Dauga, D., Mendez, M., Simion, P., Percher, M., Laporte, B., Scornavacca, C., Di Gregorio, A., Fujiwara, S., Gineste, M., Lowe, E.K., Piette, J., Racciopi, C., Ristoratore, F., Sasakura, Y., Takatori, T., Brown, T.C., Delsuc, F., Douzery, E., Gissi, C., McDougall, A., Nishida, H., Sawada, H., Swalla, B.J., Yasuo, H., and Lemaire, P.
- ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
- Nucleic Acids Res. (2016) 44, D808-D818.
- Takatori, N., Oonuma, K., Nishida, H., and Saiga, H
- Polarization of PI3K activity initiated by ooplasmic segregation guides nuclear migration in the mesendoderm.
- Developmental Cell (2015) 35, 333–343.
- Wang, K., Omotezako, T., Kishi, K., Nishida, H., and Onuma, T. A.
- Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: Novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.
- Dev. Genes Evol.(2015) 225, 149–159.
- Omotezako, T., Onuma, T. A., and Nishida, H.
- DNA interference: DNA-induced gene silencing in the appendicularian Oikopleura dioica.
- Proc. R. Soc. B (2015) 22;282
- Wang, K., and Nishida, H.
- REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies.
- BMC Bioinformatics(2015) 16, 114.
- Stolfi, A., Sasakura, Y., Chalopin, D., Satou, Y., Christiaen, L., Dantec, C., Endo, T., Naville, M., Nishida, H., Swalla, B., Volff J-N, Voskoboynik, A., Dauga, D., and Lemaire, P.
- Guidelines for the nomenclature of genetic elements in tunicate genomes.
- Genesis(2015) 53, 1–14.
- Kishi, K., Onuma, TA, and Nishida, H.
- Long-distance cell migration during larval development in the appendicularian, Oikopleura dioica.
- Dev Biol.(2014) 395(2):299-306.
- Kuwajima, M., Kumano, G., and Nishida, H.
- Regulation of the number of cell division rounds by tissue-specific transcription factors and Cdk inhibitor during ascidian embryogenesis.
- PLOS ONE(2014) 9, e90188. doi:10.1371/journal.pone.0090188.
- Kumano, G., Negoro, N., and Nishida, H.
- Transcription factor Tbx6 plays a central role in fate determination between mesenchyme and muscle in embryos of the ascidian, Halocynthia roretzi.
- Dev. Growth Differ. (2014) 56, 310-322.
- Omotezako T, Nishino A, Onuma TA, Nishida H.
- RNA interference in the appendicularian Oikopleura dioica reveals the function of the Brachyury gene.
- Dev Genes Evol. (2013) 223, 261-267.
- Nishide, K., Mugitani, M., Kumano, G., Nishida, H.
- Neurula rotation determines left-right asymmetry in ascidian tadpole larvae.
- Development (2012) 139(8):1467-75
- Kumano, G., Takatori, N., Negishi, T., Takada, T., Nishida, H.
- A maternal factor unique to ascidians silences the germline via binding to P-TEFb and RNAP II regulation.
- Curr Biol. (2011) 1308-13
- Hashimoto, H., Enomoto, A., Kumano, G., and Nishida, H.
- The transcription factor FoxB mediates temporal loss of cellular competence for notochord induction in ascidian embryos.
- Development (2011) 138, 2591-2600
- Fujikawa, T., Takatori, N., Kuwajima,M., Kim G. J., and Nishida, H.
- Tissue-specific regulation of the number of cell division rounds by inductive cell interaction and transcription factors during ascidian embryogenesis.
- Dev. Biol. (2011) 313-23.
- Negishi, T., Kumano, G., and Nishida, H.
- Polo-like kinase 1 is required for localization of PEM protein to the centrosome-attracting body and unequal cleavages in ascidian embryos.
- Dev. Growth Differ. (2011) 53, 76-87.
- Ouchi, K., Nishino, A., and Nishida, H.
- Simple procedure for sperm cryopreservation in the larvacean tunicate Oikopleura dioica.
- Zool. Sci. (2011) 28, 8-11.
- Denoeud, F., Henriet, S., ……, Nishida, H., (34番目)……… Wincker, P., and Chourrout, D. (計51人).
- Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.
- Science (2010) 330, 1381-1385.
- Takatori, N., Kumano, G., Saiga, H., and Nishida, H.
- Segregation of germ layer fates by nuclear migration-dependent localization of Not mRNA.
- Dev. Cell (2010) 19, 589-598.
- Kumano, G., Kawai, N., and Nishida, H.
- Macho-1 regulates unequal cell divisions independently of its function as a muscle determinant.
- Dev. Biol. (2010) 344, 28-?292.
- Prodon, F., Chenevert, J., Hebras, C., Dumollard, R., Faure, E., Gonzalez-Garcia, J., Nishida, H., Sardet, C., and McDougall, A.
- Dual mechanism controls asymmetric spindle position in ascidian germ cell precursors.
- Development (2010) 344, 284-292.
- Kobayashi, M., Takatori, N., Nakajima, Y., Kumano, G., Nishida, H., and Saiga, H.
- Spatial and temporal expression of two transcriptional isoforms of Lhx3, a LIM class homeobox gene, during embryogenesis of two phylogenetically remote ascidians, Halocynthia roretzi and Ciona intestinalis.
- Gene Expression Patterns (2010). 10, 98-104.
- Prodon, F., Hanawa, K., and Nishida, H. (2009).
- Actin microfilaments guide the polarized transport of nuclear pore complexes and the cytoplasmic dispersal of Vasa mRNA during GVBD in the ascidian Halocynthia roretzi.
- Dev. Biol. 330, 377-388.
- Kumano, G., and Nishida, H. (2009).
- Patterning of an ascidian embryo along the anterior-posterior axis through spatial regulation of competence and induction ability by maternally localized PEM.
- Dev. Biol. 331, 78-88.
- Niwano, T., Takatori, N., Kumano, G., and Nishida, H. (2009).
- Wnt5 is required for notochord cell intercalation in the ascidian Halocynthia roretzi.
- Biol. Cell 101, 645-659.
- Nishida, H., Satoh, N., and Hirose, E. (2009).
- More diversity and more convergence in tunicate biology.
- Zool. Sci. 27, 67-68.
- Prodon, F., Sardet, C., and Nishida, H.(2008).
- Cortical and cytoplasmic flows driven by actin microfilaments polarize the cortical ER-mRNA domain along the a-v axis in ascidian oocytes.
- Dev. Biol. 313, 682-699.
- Fujii, S., Nishio, T., and Nishida, H. (2008).
- Cleavage pattern, gastrulation, and neurulation in the appendicularian, Oikopleura dioica.
- Dev. Genes Evol. 218, 69-79.
- Sardet, C., Swalla, B. J., Satoh, N., Sasakura, Y., Branno, M., Thompson, E. M., Levine, M., and Nishida, H. (2008).
- Meeting review. Euro chordates: Ascidian community swims ahead.
- Dev. Dynam. 237, 1207-1213.
- Nishida, H. (2008).
- Development of the appendicularian Oikopleura dioica: culture, genome, and cell lineages.
- Dev. Growth Differ. 50, S239-S256.
- Lemaire, P., Smith, W. C., and Nishida, H. (2008).
- Ascidians and the plasticity of the chordate developmental program.
- Curr. Biol. 18, R620-R631.
- Negishi T, Takada T, Kawai N, Nishida H. (2007).
- Localized PEM mRNA and Protein Are Involved in Cleavage-Plane Orientation and Unequal Cell Divisions in Ascidians.
- Current Biology 17, 1014-1025.
- Tokuoka M, Kumano G, Nishida H. (2007).
- FGF9/16/20 and Wnt-5alpha signals are involved in specification of secondary muscle fate in embryos of the ascidian, Halocynthia roretzi.
- Development, Genes and Evolution 217, 515-527.
- Kawai N, Iida Y, Kumano G, Nishida H. (2007).
- Nuclear accumulation of beta-catenin and transcription of downstream genes are regulated by zygotic Wnt5alpha and maternal Dsh in ascidian embryos.
- Developmental Dynamics 236, 1570-1582.
- Matsumoto J, Kumano G, Nishida H. (2007).
- Direct activation by Ets and Zic is required for initial expression of the Brachyury gene in the ascidian notochord.
- Developmental Biology 306, 870-882.
- Kim GJ, Kumano G, Nishida H. (2007).
- Cell fate polarization in ascidian mesenchyme/muscle precursors by directed FGF signaling and role for an additional ectodermal FGF antagonizing signal in notochord/nerve cord precursors.
- Development 134, 1509-1518.
- Miyazaki, Y., Nishida, H. and Kumano, G. (2007).
- Brain induction in ascidian embryos is dependent on juxtaposition of FGF9/16/20-producing and -receiving cells.
- Development, Genes and Evolution 217, 177-188.
- Kumano, G., Yamaguchi, S. and Nishida, H. (2006).
- Overlapping expression of FoxA and Zic confers responsiveness to FGF signaling to specify notochord in ascidian embryos.
- Developmental Biology 300, 770-784.
- Kumano, G., Ezal, C. and Smith, W. C. (2006).
- ADMP2 is essential for primitive blood and heart development in Xenopus.
- Developmental Biology 299, 411-423.
- Nakamura Y, Makabe KW, Nishida H
- The functional analysis of Type I postplasmic/PEM mRNAs in embryos of the ascidian Halocynthia roretzi.
- Development, Genes and Evolution. 2006 Feb;216(2):69-80.
- Nakamura Y, Makabe KW, Nishida H
- POPK-1/Sad-1 kinase is required for the proper translocation of maternal mRNAs and putative germ plasm at the posterior pole of the ascidian embryo.
- Development. 2005 Nov;132(21):4731-42.
- Nishida H.
- Specification of embryonic axis and mosaic development in ascidians.
- Developmental Dynamics. 2005 Aug;233(4):1177-93. Review.
- Sawada K, Fukushima Y, Nishida H
- Macho-1 functions as transcriptional activator for muscle formation in embryos of the ascidian Halocynthia roretzi.
- Gene Expression Patterns. 2005 Feb;5(3):429-37.
- Kawai N, Takahashi H, Nishida H, Yokosawa H
- Regulation of NF-κB/Rel by IκB is essential for ascidian notochord formation.
- Developmental Biology. 2005 Jan 1;277(1):80-91.
- Kazuto Taniguchi and Hiroki Nishida
- Tracing cell fate in brain formation during embryogenesis of the ascidian Halocynthia roretzi.
- Development Growth and Differentiation (2004) 46, 163-180.
- Takashi Akanuma and Hiroki Nishida
- Ets-mediated brain induction in embryos of the ascidian, Halocynthia roretzi.
- Development, Genes and Evolution (2004) 214, 1-9.
- Christian Sardet, Hiroki Nishida, Fran?ois Prodon, Kaichiro Sawada
- Maternal mRNAs of PEM and macho-1, the ascidian muscle determinant, associate and move with a rough endoplasmic reticulum network in the egg cortex.
- Development (2003) 130, 5839-5849.
- Kenji Kobayashi, Kaichiro Sawada, Hiroki Yamamoto, Shuichi Wada, Hidetoshi Saiga and Hiroki Nishida
- Maternal macho-1 is an intrinsic factor that makes cell response to the same FGF signal differ between mesenchyme and notochord induction in ascidian embryos.
- Development (2003) 130, 5179-5190.
- Keisuke Kondoh, Kenji Kobayashi and Hiroki Nishida
- Suppression of macho-1-directed muscle fate by FGF and BMP is required for formation of posterior endoderm in ascidian embryos
- Development (2003) 130, 3205-3216.
- Takahito Miya and Hiroki Nishida
- An Ets transcription factor, HrEts, is target of FGF signaling and involved in induction of notochord, mesenchyme, and brain in ascidian embryos.
- Developmental Biology (2003) 261, 25-38.
- Yoriko Nakamura, Kazuhiro W. Makabe, and Hiroki Nishida
- Localization and expression pattern of type I postplasmic mRNAs in embryos of the ascidian Halocynthia roretzi.
- Gene Expression Patterns 3, 71-75.
- Hiroki Nishida
- Spatio-temporal pattern of the activation of MAP kinase in embryos of the ascidian, Halocynthia roretzi.
- Development Growth and Differentiation 45, 27-37.
- Takahito Miya and Hiroki Nishida
- Expression pattern and transcriptional control of SoxB1 in embryos of the ascidian Halocynthia roretzi.
- Zoological Science. 20, 59-67.
- Kumano, G. and Smith, W. C. (2002).
- The nodal target gene Xmenf is a component of an FGF-independent pathway of ventral mesoderm induction in Xenopus.
- Mech. Dev. 118, 45-56.
- Takashi Akanuma, Sawako Hori, Sebastien Darras, and Hiroki Nishida
- Notch signaling is involeved in nervous system fomation in ascidian embryos
- Dev. Genes Evol. 212, 459-72
- Junji Morokuma, Motoko Ueno, Hiroshi Kawanishi, Hidetoshi Saiga, and Hiroki Nishida
- HrNodal, the ascidian nodal-related gene, is expressed in the left side of the epidermis, and lies upstream of HrPitx.
- Dev. Genes Evol. 212, 439-46
- Satou Y,Yagi K,Imai KS,Yamada L,Nishida H,Satoh N.
- macho-1-related genes in Ciona embryos
- Dev. Genes Evol.212,87-92
- Miya, T. and Nishida, H.
- Isolation of cDNA clones for mRNAs transcribed zygotically during cleavage stage in ascidian, Halocynthia roretzi
- Dev. Genes Evol. 212,30-7
- Tomioka, M., Miya, T. and Nishida, H.
- Repression of zygotic gene expression in the putative germline cells in ascidian embryos
- Zool. Sci. 19,49-55
- Kim, G-J. and Nishida, H.
- Role of the FGF and MEK signaling pathway in the ascidian embryo
- Dev. Growth Differ. 43, 522-531
- Kumano, G., Ezal, C. and Smith, W. C. (2001).
- Boundaries and functional domains in the animal/vegetal axis of Xenopus gastrula mesoderm.
- Dev. Biol. 236, 465-477.
- Darras, S. and Nishida, H.
- The BMP/CHORDIN antagonism controls sensory pigment cell specification and differentiation in the ascidian embryo
- Dev. Biol. 236, 277-288
- Darras, S. and Nishida, H.
- The BMP signaling pathway is required together with the FGF pathway for notochord induction in the ascidian embryo
- Development 128, 2629-2638
- Makabe, K.W., Kawashima, T., Kawashima, S., Minokawa, T., Adachi, A., Kawamura, H., Ishikawa, H., Yasuda, R., Yamamoto, H., Kondoh, K., Arioka, S., Sasakura, Y., Kobayashi, A., Yagi, K., Shojima, K., Kondoh, Y., Kido, S., Tsujinami, M., Nishimaru, N., Takahashi, M., Nakamura, T., Kanehisa, M., Ogasawara, M., Nishikata, T. and Nishida, H.
- Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development
- Development 128, 2555-2567
- Minokawa, T., Yagi, K., Makabe, K.W. and Nishida, H.
- Binary specification of nerve cord and notochord cell fates in ascidian embryos
- Development 128, 2007-2017
- Kobayashi, K. and Nishida, H.
- Nuclear Plasticity and Timing Mechanisms of the Initiation of Alkaline Phosphatase Expression in Cytoplasm-transferred Blastomeres of Ascidians
- Dev. Biol. 234, 510-520
- Ogasawara, M.*, Minokawa, T.*, Sasakura, Y., Nishida, H. and Makabe, K. W. (*: equally contribution)
- A large-scale whole-mount in situ hybridization system: rapid one-tube preparation of DIG-labeled RNA probes and high throughput hybridization using 96-well silent screen plates
- Zool. Sci. 18, 187-193
- Nishida, H. and Sawada, K.
- macho-1 encodes a localized mRNA in ascidian eggs that specifies muscle fate during embryogenesis
- Nature 409, 724-729
- Kumano, G. and Smith, W. C. (2000).
- FGF signaling restricts the primary blood islands to ventral mesoderm.
- Dev. Biol. 228, 304-314.
- Kim, G-J., Yamada, A. and Nishida, H.
- An FGF signal from endoderm and localized factors in the posterior-vegetal egg cytoplasm pattern the mesodermal tissues in the ascidian embryo
- Development 127, 2853-2862
- Hirano, T. and Nishida, H.
- Developmental fates of larval tissues after metamorphosis in ascidian, Halocynthia roretzi
- II. Origin of endodermal tissues of the juvenile
- Dev. Genes Evol. 210, 55-63
- Kawashima, T., Kawashima, S., Kanehisa, M., Nishida, H. and Makabe, K. W.
- MAGEST: Maboya gene expression patterns and expression sequence tags
- Nucleic Acid Research 28, 133-0135
- Kumano, G., Belluzzi, L. and Smith, W. C. (1999).
- Spatial and temporal properties of ventral blood island induction in Xenopus laevis.
- Development 126, 5327-5337.
- Iseto, T. and Nishida, H.
- Ultrastructual studies on the centrosome-attracting body: specific electron-dense matrix and implications of it's role in unequal cleavage
- Dev. Growth Differ. 41, 601-610
- Kim, G-J. and Nishida, H.
- Suppression of muscle fate by cellular interaction is required for mesenchyme formation during ascidian embryogenesis
- Dev. Biol. 214, 9-22
- Nakatani, Y. and Nishida, H.
- Duration of competence and inducing capacity of blastomeres in notochord induction during ascidian embryogenesis
- Dev. Growth Differ. 41, 449-453
- Yamada, A. and Nishida, H.
- Distinct parameters are involved in controlling the number of rounds of cell division in each tissue during ascidian embryogenesis
- J. Exp. Zool. 284, 379-391
- Nishikata, T., Hibino, T. and Nishida, H.
- The centrosome-attracting body, microtubule system, and posterior egg cytoplasm are involved in positioning of cleavage planes in the ascidian embryo
- Dev. Biol. 209, 72-85
- Oka, T., Amikura, R., Kobayashi, S., Yamamoto, H. and Nishida, H.
- Localization of mitochondrial large ribosomal RNA in the myoplasm of the early ascidian embryo
- Dev. Growth Differ. 41, 1-8
- Kim, G-J. and Nishida, H.
- Monoclonal antibodies against differentiating mesenchyme cells in larvae of the ascidian, Halocynthia roretzi
- Zool. Sci. 15, 553-559
- Kumano, G. and Nishida, H.
- Maternal and Zygotic Expression of the Endoderm-Specific Alkaline Phosphatase Gene in Embryos of the Ascidian, Halocynthia roretzi
- Dev. Biol. 198, 245-252
- Bates, W. R. and Nishida, H.
- Developmental Roles of Nuclear Complex Factors Released During Oocyte Maturation in the Ascidians Halocynthia roretzi and Boltenia villosa
- Zool. Sci. 15, 59-66
- Hibino, T., Nishikata, T. and Nishida, H.
- CAB(Centrosome-attracting body): A novel structure closely related to unequal cleavages in the ascidian embryo
- Dev. Growth Differ. 40, 85-95
- Hirano, T. and Nishida, H.
- Developmental fates of larval tissues after metamorphosis in ascidian, Halocynthia roretzi
- I. Origin of mesodermal tissues of the juvenile
- Dev. Biol. 192, 199-210
- Nakatani, Y. and Nishida, H.
- Ras is an essential component for notochord formation during ascidian embryogenesis
- Mech. Dev. 68, 81-89
- Hori, S., Saitoh, T., Matsumoto, M., Makabe, K. W. and Nishida, H.
- A Notch homologue from Halocynthia roretzi is preferentially expressed in the central nervous system during ascidian embryogenesis
- Dev. Genes Evol. 207, 371-380
- Nishida, H. and Kumano, G.
- Analysis of temporal expression of endoderm-specific alkaline phosphatase during development of the ascidian, Halocynthia roretzi
- Dev. Growth Differ. 39, 199-203
- Kawaminami, S. and Nishida, H.
- Induction of trunk lateral cells, the blood cell precursors, during ascidian embryogenesis
- Dev. Biol. 181, 14-20
- Yamada, A. and Nishida, H.
- Distribution of cytoplasmic determinants in unfertilized eggs of the ascidian Halocynthia roretzi
- Dev. Genes Evol. 206, 297-304
- Kumano, G., Yokosawa, H. and Nishida, H.
- Biochemical evidence for membrane-bound endoderm-specific alkaline phosphatase in larvae of the ascidian, Halocynthia roretzi
- Eur. J. Biochem. 240, 485-489
- Nakatani, Y.,Yasuo, H., Satoh, N. and Nishida, H.
- Basic fibroblast growth factor induces notochord formation and the expression of As-T, a Brachyury homolog, during ascidian embryogenesis
- Development 122, 2023-2031
- Nishida, H.
- Vegetal egg cytoplasm promotes gastrulation and is responsible for specification of vegetal blastomeres in embryos of the ascidian Halocynthia roretzi
- Development 122, 1271-1279
- Nakatani, Y. and Nishida, H.
- Induction of notochord during ascidian embryogenesis
- Dev. Biol. 166, 289-299
- Nishida, H.
- Localization of determinants for formation of the anterior-posterior axis in eggs of the ascidian Halocynthia roretzi
- Development 120, 3093-3104
- Nishida, H.
- Localization of egg cytoplasm that promotes differentiation to epidermis in embryos of the ascidian Halocynthia roretzi
- Development 120, 235-243
- Nishida, H.
- Localized regions of egg cytoplasm that promote expression of endoderm-specific alkaline phasphatase in embryos of ascidian Halocynthia roretzi
- Development 118, 1-7
- Nishida, H.
- Regionality of egg cytoplasm that promotes muscle differentiation in ascidian, Halocynthia roretzi
- Development 116, 521-529
- Nishida, H.
- Developmental potential for tissue differentiation of fully dissociated cells of the ascidian embryos
- Roux's Arch. Dev. Biol. 201, 81-87
- Nishida, H.
- Induction of brain and sensory pigment cells in the ascidian embryo analyzed by experiments with isolate blastomeres
- Development 112, 389-395
- Nishida, H.
- Determinative mechanisms in secondary muscle lineages of ascidian embryos: development of muscle-specific features in isolated muscle progenitor cells
- Development 108, 559-568