Last Updated:2nd March 2022

Nishida's Web of Science

Nishida's Scopus h-index=45, 5494 total citations

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2023

• Nishida, H. Y., Hamada, K., Koshita, M., Ohta, Y., and Nishida, H.
• Ascidian gastrulation and blebbing activity of isolated endoderm blastomeres.
• Dev. Biol. (2023) 496, 24-35. doi: 10.1016/j.ydbio.2023.01.007.

2022

• Nishida, H., Matsuo, M., Konishi, S., Ohno, N., Manni, L., and Onuma T.A.
• Germline development during embryogenesis of the larvacean, Oikopleura dioica.
• Dev. Biol. (2022) 481, 188-200. doi: 10.1016/j.ydbio.2021.10.009.


• Onuma, T. A. and Nishida, H.
• Developmental biology of the larvacean Oikopleura dioica : Genome resources, functional screening, and imaging.
• Dev. Growth Differ. (2022) 64, 67-82. doi: 10.1111/dgd.12769.

2021

• Nishida, H., Matsuo, M., Konishi, S., Ohno, N., Manni, L., and Onuma T.A.
• Germline development during embryogenesis of the larvacean, Oikopleura dioica.
• Dev. Biol. (2022) 481, 188-200. doi: 10.1016/j.ydbio.2021.10.009.


• Marti-Solans, J., Godoy, H., Diaz-Gracia, M., Onuma, T., Nishida, H., Albalat R., and Canestro, C.
• Massive Gene Loss and Function Shuffling in Appendicularians Stretch the Boundaries of Chordate Wnt Family Evolution.
• Frontiers Cell Dev. Biol. (2021) 9, 700827. doi: 10.3389/fcell.2021.700827.


• Nishida, H., Ohno, N., Caicci, F., and Manni, L.
• 3D reconstruction of structures of hatched larva and young juvenile of the larvacean Oikopleura dioica using SBF-SEM.
• Scientific Reports (2021) 11, 4833. doi: 10.1038/s41598-021-83706-y.


• Shih, Y., Wang, K., Kumano, G., and Nishida, H.
• Expression and functional analyses of ectodermal transcription factors FoxJ-r, SoxF, and SP8/9 in early embryos of the ascidian Halocynthia roretzi.
• Zoological Science (2021) 38, 26-35. doi: 10.2108/zs200128.

2020

• Coulcher, J. F., Roure, A., Chowdhury, R., Robert, M., Lescat, L., Bouin, A., Cadavid, J. C., Nishida, H., and Darras, S.
• Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos.
• eLIFE  (2020) 9, e59157. doi: 10.7554/eLife.59157.


• Morita, R., Onuma, T.A., Manni, L., Ohno, N., Nishida, H.
• Mouth opening is mediated by separation of dorsal and ventral daughter cells of the lip precursor cells in the larvacean, Oikopleura dioica.
• Dev. Genes Evol.  (2020) 230, 315?327. doi: 10.1007/s00427-020-00667-4


• Wang, K., Tomura, R., Chen, W., Kiyooka, M., Ishizaki, H., Aizu, T., Minakuchi, Y., Seki, M., Suzuki, Y., Omotezako, T., Suyama, R., Masunaga, A., Plessy, C., Luscombe, N.M., Dantec, C., Lemaire, P., Itoh, T., Toyoda, A., Nishida, H., and Onuma, T.A.,
• A genome database for a Japanese population of the larvacean Oikopleura dioica.
• Dev. Growth Differ.  (2020) 62, 450?461. doi: 10.1111/dgd.12689.


• Onuma, T.A., Hayashi, M., Gyoja, F., Kishi, K., Wang, K., Nishida, H.
• A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
• Proc. Natl. Acad. Sci. USA.  (2020) 117, 4188-4198. doi: 10.1073/pnas.1916858117.


• Matsuo, M., Onuma, T.A., Omotezako, T., Nishida, H.
• Protein phosphatase 2A is essential to maintain meiotic arrest, and to prevent Ca2+ burst at spawning and eventual parthenogenesis in the larvacean Oikopleura dioica.
• Dev. Biol.  (2020) 460, 155-163. doi: 10.1016/j.ydbio.2019.12.005.


• Dardaillon, J., Dauga, D., Simion, P., Faure, E., Onuma, T.A., DeBiasse, M.B., Louis, A., Nitta, K.R., Naville, M., Besnardeau, L., Reeves, W., Wang, K., Fagotto, M., Gueroult-Bellone, M., Fujiwara S, Dumollard R, Veeman M, Volff JN, Roest Crollius H, Douzery E, Ryan JF, Davidson, B., Nishida, H., Dantec, C., Lemaire, P.
• ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.
• Nucleic Acids Res.   (2020) 48, D668-D675. doi: 10.1093/nar/gkz955.
  

2019

• Tanaka, Y., Yamada, S., Connop, S. L., Hashii, N., Sawada, H., Shih, Y., and Nishida, H.
• Vitelline membrane proteins promote left-sided nodal expression after neurula rotation in the ascidian, Halocynthia roretzi.
• Dev. Biol.  Biol. (2019) 449, 52-61. doi: 10.1016/j.ydbio.2019.01.016
  
• Yamada, S., Tanaka, Y., Imai, K.S., Saigou, M., Onuma, T.A., and Nishida, H.
• Wavy movements of epidermis monocilia drive the neurula rotation that determines left?right asymmetry in ascidian embryos.
• Dev. Biol.  (2019) 448, 173-182. doi: 10.1016/j.ydbio.2018.07.023
  

2018

• Somorjai, I. M. L., Marti-Solans, J., Diaz-Gracia, M., Nishida, H., Imai, K. S., Escriv?, H., Canestro, C., and Albalat, R.
• Wnt evolution and function shuffling in liberal and conservative chordate genomes.
• Genome Biology   (2018) 19, 98. doi: 10.1186/s13059-018-1468-3
  
• Miyaoku, K., Nakamoto, A., Nishida, H., and Kumano, G.
• Control of Pem protein level by localized maternal factors for transcriptional regulation in the germline of the ascidian, Halocynthia roretzi.
• PLOS ONE  (2018) 13,e0196500.?ｿｽ@doi: 10.1371/journal.pone.0196500
  
• Brozovic, M., Dantec, C., Dardaillon, J., Dauga, D., Faure, E., Gineste, M., Louis, A., Naville, M., Nitta, K. R., Piette, J., Reeves, W., Scornavacca, C., Simion, P., Vincentelli, R., Bellec, M., Aicha, S, B., Fagotto, M., Gueroult-Bellone, M., Haeussler, M., Jacox, E., Lowe, E. K., Mendez, M., Roberge, A., Stolfi, A., Yokomori, R., Brown. T., Cambillau, C., Christiaen, L., Delsuc, F., Douzery, E., Dumollard, R., Kusakabe, T., Nakai, K., Nishida, H., Satou, Y., Swalla, B., Veeman, M., Volff, J-N., and Lemaire, P.
• ANISEED 2017: Extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
• Nucleic Acids Res.  (2018) 46, D718–D725. doi: 10.1093/nar/gkx1108 .
  

2017

• Onuma, T. A., Matsuo, M., and Nishida, H.
• Modified whole-mount in situ hybridisation and immunohistochemistry protocols without removal of the vitelline membrane in the appendicularian Oikopleura dioica.
• Dev. Genes Evol.  (2017) 227, 367–374. doi: 10.1007/s00427-017-0588-1 .
  
• Kishi, K., Hayashi, M., Onuma, T. A., Nishida, H.
• Patterning and morphogenesis of the intricate but stereotyped oikoplastic epidermis of the appendicularian, Oikopleura dioica.
• Dev. Biol.   (2017) 428, 245-257. doi: 10.1016/j.ydbio.2017.06.008.
  
• Wang, K., Dantec, C., Lemaire, P., Onuma, T. A., and Nishida, H.
• Genome-wide survey of miRNAs and their evolutionary history in the ascidian, Halocynthia roretzi.
• BMC Genomics  (2017) 18, 314. doi: 10.1186/s12864-017-3707-5.
  
• Omotezako, T., Matsuo, M., Onuma, T. A., and Nishida, H.
• DNA interference-mediated screening of maternal factors in the chordate Oikopleura dioica.
• Scientific Reports   (2017) 7, 44226. dio:10.1038/srep44226 .
  
• Tokuhisa, M., Muto, M., and Nishida, H.
• Eccentric position of the germinal vesicle and cortical flow during oocyte maturation specify the animal-vegetal axis of ascidian embryos.
• Development   (2017) 144, 897-904. doi:10.1242/dev.146282 .
  
• Onuma, T.A., Isobe, M., and Nishida, H.
• Internal and external morphology of adults of the appendicularian, Oikopleura dioica: an SEM study.
• Cell and Tissue Research  (2017) 367, 213-227.   doi: 10.1007/s00441-016-2524-5 .
  

2016

• Onuma, T.A., Isobe, M., and Nishida, H.
• Internal and external morphology of adults of the appendicularian, Oikopleura dioica: an SEM study.
• Cell and Tissue Research (2016) in press.
  
• Kodama, H., Miyata, Y., Kuwajima, M., Izuchi, R., Kobayashi, A., Gyoja, F., Onuma, T.A., Kumano, G., Nishida, H.
•  Redundant mechanisms are involved in suppression of default cell fates during embryonic mesenchyme and notochord induction in ascidians.
• Dev. Biol. (2016) 416, 162–172. doi: 10.1016/j.ydbio.2016.05.033.
  
• Brozovic, M., Martin, C., Dantec, C., Dauga, D., Mendez, M., Simion, P., Percher, M., Laporte, B., Scornavacca, C., Di Gregorio, A., Fujiwara, S., Gineste, M., Lowe, E.K., Piette, J., Racciopi, C., Ristoratore, F., Sasakura, Y., Takatori, T., Brown, T.C., Delsuc, F., Douzery, E., Gissi, C., McDougall, A., Nishida, H., Sawada, H., Swalla, B.J., Yasuo, H., and Lemaire, P.
• ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
• Nucleic Acids Res. (2016) 44, D808-D818.
  

2015

• Takatori, N., Oonuma, K., Nishida, H., and Saiga, H
• Polarization of PI3K activity initiated by ooplasmic segregation guides nuclear migration in the mesendoderm.
• Developmental Cell (2015) 35, 333–343.
  
• Wang, K., Omotezako, T., Kishi, K., Nishida, H., and Onuma, T. A.
• Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: Novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader.
• Dev. Genes Evol.(2015) 225, 149–159.
  
• Omotezako, T., Onuma, T. A., and Nishida, H.
• DNA interference: DNA-induced gene silencing in the appendicularian Oikopleura dioica.
• Proc. R. Soc. B (2015) 22;282 


• Wang, K., and Nishida, H.
• REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies.
• BMC Bioinformatics(2015) 16, 114.


• Stolfi, A., Sasakura, Y., Chalopin, D., Satou, Y., Christiaen, L., Dantec, C., Endo, T., Naville, M., Nishida, H., Swalla, B., Volff J-N, Voskoboynik, A., Dauga, D., and Lemaire, P.
• Guidelines for the nomenclature of genetic elements in tunicate genomes.
• Genesis(2015) 53, 1–14.

2014

• Kishi, K., Onuma, TA, and Nishida, H.
• Long-distance cell migration during larval development in the appendicularian, Oikopleura dioica.
• Dev Biol.(2014) 395(2):299-306.


• Kuwajima, M., Kumano, G., and Nishida, H.
• Regulation of the number of cell division rounds by tissue-specific transcription factors and Cdk inhibitor during ascidian embryogenesis.
• PLOS ONE(2014) 9, e90188. doi:10.1371/journal.pone.0090188.


• Kumano, G., Negoro, N., and Nishida, H.
• Transcription factor Tbx6 plays a central role in fate determination between mesenchyme and muscle in embryos of the ascidian, Halocynthia roretzi.
• Dev. Growth Differ. (2014)56, 310-322.

2013

• Omotezako T, Nishino A, Onuma TA, Nishida H.
• RNA interference in the appendicularian Oikopleura dioica reveals the function of the Brachyury gene.
• Dev Genes Evol. (2013) 223, 261-267.

2012

• Nishide, K., Mugitani, M., Kumano, G., Nishida, H.
• Neurula rotation determines left-right asymmetry in ascidian tadpole larvae.
• Development (2012) 139(8):1467-75

2011

• Kumano, G., Takatori, N., Negishi, T., Takada, T., Nishida, H.
• A maternal factor unique to ascidians silences the germline via binding to P-TEFb and RNAP II regulation.
• Curr Biol. (2011) 1308-13


• Hashimoto, H., Enomoto, A., Kumano, G., and Nishida, H.
• The transcription factor FoxB mediates temporal loss of cellular competence for notochord induction in ascidian embryos.
• Development (2011) 138, 2591-2600


• Fujikawa, T., Takatori, N., Kuwajima,M., Kim G. J., and Nishida, H.
• Tissue-specific regulation of the number of cell division rounds by inductive cell interaction and transcription factors during ascidian embryogenesis.
• Dev. Biol. (2011) 313-23.


• Negishi, T., Kumano, G., and Nishida, H.
• Polo-like kinase 1 is required for localization of PEM protein to the centrosome-attracting body and unequal cleavages in ascidian embryos.
• Dev. Growth Differ. (2011) 53, 76-87.


• Ouchi, K., Nishino, A., and Nishida, H.
• Simple procedure for sperm cryopreservation in the larvacean tunicate Oikopleura dioica.
• Zool. Sci. (2011) 28, 8-11.

2010

• Denoeud, F., Henriet, S., 窶ｦ窶ｦ, Nishida, H., (34逡ｪ逶ｮ)窶ｦ窶ｦ窶ｦ Wincker, P., and Chourrout, D. (險・1莠ｺ).
• Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate.
• Science (2010) 330, 1381-1385.


• Takatori, N., Kumano, G., Saiga, H., and Nishida, H.
• Segregation of germ layer fates by nuclear migration-dependent localization of Not mRNA.
• Dev. Cell (2010) 19, 589-598.


• Kumano, G., Kawai, N., and Nishida, H.
• Macho-1 regulates unequal cell divisions independently of its function as a muscle determinant.
• Dev. Biol. (2010) 344, 28-?292.


• Prodon, F., Chenevert, J., Hebras, C., Dumollard, R., Faure, E., Gonzalez-Garcia, J., Nishida, H., Sardet, C., and McDougall, A.
• Dual mechanism controls asymmetric spindle position in ascidian germ cell precursors.
• Development (2010) 344, 284-292.


• Kobayashi, M., Takatori, N., Nakajima, Y., Kumano, G., Nishida, H., and Saiga, H.
• Spatial and temporal expression of two transcriptional isoforms of Lhx3, a LIM class homeobox gene, during embryogenesis of two phylogenetically remote ascidians, Halocynthia roretzi and Ciona intestinalis.
• Gene Expression Patterns (2010). 10, 98-104.

2009

• Prodon, F., Hanawa, K., and Nishida, H. (2009).
• Actin microfilaments guide the polarized transport of nuclear pore complexes and the cytoplasmic dispersal of Vasa mRNA during GVBD in the ascidian Halocynthia roretzi.
• Dev. Biol. 330, 377-388.


• Kumano, G., and Nishida, H. (2009).
• Patterning of an ascidian embryo along the anterior-posterior axis through spatial regulation of competence and induction ability by maternally localized PEM.
• Dev. Biol. 331, 78-88.


• Niwano, T., Takatori, N., Kumano, G., and Nishida, H. (2009).
• Wnt5 is required for notochord cell intercalation in the ascidian Halocynthia roretzi.
• Biol. Cell 101, 645-659.
• Nishida, H., Satoh, N., and Hirose, E. (2009).
• More diversity and more convergence in tunicate biology.
• Zool. Sci. 27, 67-68.

2008

• Prodon, F., Sardet, C., and Nishida, H.(2008).
• Cortical and cytoplasmic flows driven by actin microfilaments polarize the cortical ER-mRNA domain along the a-v axis in ascidian oocytes.
• Dev. Biol. 313, 682-699.


• Fujii, S., Nishio, T., and Nishida, H. (2008).
• Cleavage pattern, gastrulation, and neurulation in the appendicularian, Oikopleura dioica.
• Dev. Genes Evol. 218, 69-79.


• Sardet, C., Swalla, B. J., Satoh, N., Sasakura, Y., Branno, M., Thompson, E. M., Levine, M., and Nishida, H. (2008).
• Meeting review. Euro chordates: Ascidian community swims ahead.
• Dev. Dynam. 237, 1207-1213.


• Nishida, H. (2008).
• Development of the appendicularian Oikopleura dioica: culture, genome, and cell lineages.
• Dev. Growth Differ. 50, S239-S256.


• Lemaire, P., Smith, W. C., and Nishida, H. (2008).
• Ascidians and the plasticity of the chordate developmental program.
• Curr. Biol. 18, R620-R631.

2007

• Negishi T, Takada T, Kawai N, Nishida H. (2007).
• Localized PEM mRNA and Protein Are Involved in Cleavage-Plane Orientation and Unequal Cell Divisions in Ascidians.
• Current Biology 17, 1014-1025.


• Tokuoka M, Kumano G, Nishida H. (2007).
• FGF9/16/20 and Wnt-5alpha signals are involved in specification of secondary muscle fate in embryos of the ascidian, Halocynthia roretzi.
• Development, Genes and Evolution 217, 515-527.


• Kawai N, Iida Y, Kumano G, Nishida H. (2007).
• Nuclear accumulation of beta-catenin and transcription of downstream genes are regulated by zygotic Wnt5alpha and maternal Dsh in ascidian embryos.
• Developmental Dynamics 236, 1570-1582.


• Matsumoto J, Kumano G, Nishida H. (2007).
• Direct activation by Ets and Zic is required for initial expression of the Brachyury gene in the ascidian notochord.
• Developmental Biology 306, 870-882.


• Kim GJ, Kumano G, Nishida H. (2007).
• Cell fate polarization in ascidian mesenchyme/muscle precursors by directed FGF signaling and role for an additional ectodermal FGF antagonizing signal in notochord/nerve cord precursors.
• Development 134, 1509-1518.


• Miyazaki, Y., Nishida, H. and Kumano, G. (2007).
• Brain induction in ascidian embryos is dependent on juxtaposition of FGF9/16/20-producing and -receiving cells.
• Development, Genes and Evolution 217, 177-188.

2006

• Kumano, G., Yamaguchi, S. and Nishida, H. (2006).
• Overlapping expression of FoxA and Zic confers responsiveness to FGF signaling to specify notochord in ascidian embryos.
• Developmental Biology 300, 770-784.


• Kumano, G., Ezal, C. and Smith, W. C. (2006).
• ADMP2 is essential for primitive blood and heart development in Xenopus.
• Developmental Biology 299, 411-423.


• Nakamura Y, Makabe KW, Nishida H
• The functional analysis of Type I postplasmic/PEM mRNAs in embryos of the ascidian Halocynthia roretzi.
• Development, Genes and Evolution. 2006 Feb;216(2):69-80.

2005

• Nakamura Y, Makabe KW, Nishida H
• POPK-1/Sad-1 kinase is required for the proper translocation of maternal mRNAs and putative germ plasm at the posterior pole of the ascidian embryo.
• Development. 2005 Nov;132(21):4731-42.


• Nishida H.
• Specification of embryonic axis and mosaic development in ascidians.
• Developmental Dynamics. 2005 Aug;233(4):1177-93. Review.


• Sawada K, Fukushima Y, Nishida H
• Macho-1 functions as transcriptional activator for muscle formation in embryos of the ascidian Halocynthia roretzi.
• Gene Expression Patterns. 2005 Feb;5(3):429-37.


• Kawai N, Takahashi H, Nishida H, Yokosawa H
• Regulation of NF-κB/Rel by IκB is essential for ascidian notochord formation.
• Developmental Biology. 2005 Jan 1;277(1):80-91.

2004

• Kazuto Taniguchi and Hiroki Nishida
• Tracing cell fate in brain formation during embryogenesis of the ascidian Halocynthia roretzi.
• Development Growth and Differentiation (2004) 46, 163-180.


• Takashi Akanuma and Hiroki Nishida
• Ets-mediated brain induction in embryos of the ascidian, Halocynthia roretzi.
• Development, Genes and Evolution (2004) 214, 1-9.

2003

• Christian Sardet, Hiroki Nishida, Fran?ois Prodon, Kaichiro Sawada
• Maternal mRNAs of PEM and macho-1, the ascidian muscle determinant, associate and move with a rough endoplasmic reticulum network in the egg cortex.
• Development (2003) 130, 5839-5849.


• Kenji Kobayashi, Kaichiro Sawada, Hiroki Yamamoto, Shuichi Wada, Hidetoshi Saiga and Hiroki Nishida
• Maternal macho-1 is an intrinsic factor that makes cell response to the same FGF signal differ between mesenchyme and notochord induction in ascidian embryos.
• Development (2003) 130, 5179-5190.


• Keisuke Kondoh, Kenji Kobayashi and Hiroki Nishida
• Suppression of macho-1-directed muscle fate by FGF and BMP is required for formation of posterior endoderm in ascidian embryos
• Development (2003) 130, 3205-3216.


• Takahito Miya and Hiroki Nishida
• An Ets transcription factor, HrEts, is target of FGF signaling and involved in induction of notochord, mesenchyme, and brain in ascidian embryos.
• Developmental Biology (2003) 261, 25-38.


• Yoriko Nakamura, Kazuhiro W. Makabe, and Hiroki Nishida
• Localization and expression pattern of type I postplasmic mRNAs in embryos of the ascidian Halocynthia roretzi.
• Gene Expression Patterns 3, 71-75.


• Hiroki Nishida
• Spatio-temporal pattern of the activation of MAP kinase in embryos of the ascidian, Halocynthia roretzi.
• Development Growth and Differentiation 45, 27-37.


• Takahito Miya and Hiroki Nishida
• Expression pattern and transcriptional control of SoxB1 in embryos of the ascidian Halocynthia roretzi.
• Zoological Science. 20, 59-67.

2002

• Kumano, G. and Smith, W. C. (2002).
• The nodal target gene Xmenf is a component of an FGF-independent pathway of ventral mesoderm induction in Xenopus.
• Mech. Dev. 118, 45-56.


• Takashi Akanuma, Sawako Hori, Sebastien Darras, and Hiroki Nishida
• Notch signaling is involeved in nervous system fomation in ascidian embryos
• Dev. Genes Evol. 212, 459-72


• Junji Morokuma, Motoko Ueno, Hiroshi Kawanishi, Hidetoshi Saiga, and Hiroki Nishida
• HrNodal, the ascidian nodal-related gene, is expressed in the left side of the epidermis, and lies upstream of HrPitx.
• Dev. Genes Evol. 212, 439-46


• Satou Y,Yagi K,Imai KS,Yamada L,Nishida H,Satoh N.
• macho-1-related genes in Ciona embryos
• Dev. Genes Evol.212,87-92


• Miya, T. and Nishida, H.
• Isolation of cDNA clones for mRNAs transcribed zygotically during cleavage stage in ascidian, Halocynthia roretzi
• Dev. Genes Evol. 212,30-7


• Tomioka, M., Miya, T. and Nishida, H.
• Repression of zygotic gene expression in the putative germline cells in ascidian embryos
• Zool. Sci. 19,49-55

2001

• Kim, G-J. and Nishida, H.
• Role of the FGF and MEK signaling pathway in the ascidian embryo
• Dev. Growth Differ. 43, 522-531


• Kumano, G., Ezal, C. and Smith, W. C. (2001).
• Boundaries and functional domains in the animal/vegetal axis of Xenopus gastrula mesoderm.
• Dev. Biol. 236, 465-477.


• Darras, S. and Nishida, H.
• The BMP/CHORDIN antagonism controls sensory pigment cell specification and differentiation in the ascidian embryo
• Dev. Biol. 236, 277-288


• Darras, S. and Nishida, H.
• The BMP signaling pathway is required together with the FGF pathway for notochord induction in the ascidian embryo
• Development 128, 2629-2638


• Makabe, K.W., Kawashima, T., Kawashima, S., Minokawa, T., Adachi, A., Kawamura, H., Ishikawa, H., Yasuda, R., Yamamoto, H., Kondoh, K., Arioka, S., Sasakura, Y., Kobayashi, A., Yagi, K., Shojima, K., Kondoh, Y., Kido, S., Tsujinami, M., Nishimaru, N., Takahashi, M., Nakamura, T., Kanehisa, M., Ogasawara, M., Nishikata, T. and Nishida, H.
• Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development
• Development 128, 2555-2567


• Minokawa, T., Yagi, K., Makabe, K.W. and Nishida, H.
• Binary specification of nerve cord and notochord cell fates in ascidian embryos
• Development 128, 2007-2017


• Kobayashi, K. and Nishida, H.
• Nuclear Plasticity and Timing Mechanisms of the Initiation of Alkaline Phosphatase Expression in Cytoplasm-transferred Blastomeres of Ascidians
• Dev. Biol. 234, 510-520


• Ogasawara, M.*, Minokawa, T.*, Sasakura, Y., Nishida, H. and Makabe, K. W. (*: equally contribution)
• A large-scale whole-mount in situ hybridization system: rapid one-tube preparation of DIG-labeled RNA probes and high throughput hybridization using 96-well silent screen plates
• Zool. Sci. 18, 187-193
• Nishida, H. and Sawada, K.
• macho-1 encodes a localized mRNA in ascidian eggs that specifies muscle fate during embryogenesis
• Nature 409, 724-729

2000

• Kumano, G. and Smith, W. C. (2000).
• FGF signaling restricts the primary blood islands to ventral mesoderm.
• Dev. Biol. 228, 304-314.


• Kim, G-J., Yamada, A. and Nishida, H.
• An FGF signal from endoderm and localized factors in the posterior-vegetal egg cytoplasm pattern the mesodermal tissues in the ascidian embryo
• Development 127, 2853-2862


• Hirano, T. and Nishida, H.
• Developmental fates of larval tissues after metamorphosis in ascidian, Halocynthia roretzi
• II. Origin of endodermal tissues of the juvenile
• Dev. Genes Evol. 210, 55-63


• Kawashima, T., Kawashima, S., Kanehisa, M., Nishida, H. and Makabe, K. W.
• MAGEST: Maboya gene expression patterns and expression sequence tags
• Nucleic Acid Research 28, 133-0135

1999

• Kumano, G., Belluzzi, L. and Smith, W. C. (1999).
• Spatial and temporal properties of ventral blood island induction in Xenopus laevis.
• Development 126, 5327-5337.


• Iseto, T. and Nishida, H.
• Ultrastructual studies on the centrosome-attracting body: specific electron-dense matrix and implications of it's role in unequal cleavage
• Dev. Growth Differ. 41, 601-610


• Kim, G-J. and Nishida, H.
• Suppression of muscle fate by cellular interaction is required for mesenchyme formation during ascidian embryogenesis
• Dev. Biol. 214, 9-22


• Nakatani, Y. and Nishida, H.
• Duration of competence and inducing capacity of blastomeres in notochord induction during ascidian embryogenesis
• Dev. Growth Differ. 41, 449-453


• Yamada, A. and Nishida, H.
• Distinct parameters are involved in controlling the number of rounds of cell division in each tissue during ascidian embryogenesis
• J. Exp. Zool. 284, 379-391


• Nishikata, T., Hibino, T. and Nishida, H.
• The centrosome-attracting body, microtubule system, and posterior egg cytoplasm are involved in positioning of cleavage planes in the ascidian embryo
• Dev. Biol. 209, 72-85


• Oka, T., Amikura, R., Kobayashi, S., Yamamoto, H. and Nishida, H.
• Localization of mitochondrial large ribosomal RNA in the myoplasm of the early ascidian embryo
• Dev. Growth Differ. 41, 1-8

1998

• Kim, G-J. and Nishida, H.
• Monoclonal antibodies against differentiating mesenchyme cells in larvae of the ascidian, Halocynthia roretzi
• Zool. Sci. 15, 553-559


• Kumano, G. and Nishida, H.
• Maternal and Zygotic Expression of the Endoderm-Specific Alkaline Phosphatase Gene in Embryos of the Ascidian, Halocynthia roretzi
• Dev. Biol. 198, 245-252


• Bates, W. R. and Nishida, H.
• Developmental Roles of Nuclear Complex Factors Released During Oocyte Maturation in the Ascidians Halocynthia roretzi and Boltenia villosa
• Zool. Sci. 15, 59-66


• Hibino, T., Nishikata, T. and Nishida, H.
• CAB(Centrosome-attracting body): A novel structure closely related to unequal cleavages in the ascidian embryo
• Dev. Growth Differ. 40, 85-95

1997

• Hirano, T. and Nishida, H.
• Developmental fates of larval tissues after metamorphosis in ascidian, Halocynthia roretzi
• I. Origin of mesodermal tissues of the juvenile
• Dev. Biol. 192, 199-210


• Nakatani, Y. and Nishida, H.
• Ras is an essential component for notochord formation during ascidian embryogenesis
• Mech. Dev. 68, 81-89


• Hori, S., Saitoh, T., Matsumoto, M., Makabe, K. W. and Nishida, H.
• A Notch homologue from Halocynthia roretzi is preferentially expressed in the central nervous system during ascidian embryogenesis
• Dev. Genes Evol. 207, 371-380


• Nishida, H. and Kumano, G.
• Analysis of temporal expression of endoderm-specific alkaline phosphatase during development of the ascidian, Halocynthia roretzi
• Dev. Growth Differ. 39, 199-203


• Kawaminami, S. and Nishida, H.
• Induction of trunk lateral cells, the blood cell precursors, during ascidian embryogenesis
• Dev. Biol. 181, 14-20

1996

• Yamada, A. and Nishida, H.
• Distribution of cytoplasmic determinants in unfertilized eggs of the ascidian Halocynthia roretzi
• Dev. Genes Evol. 206, 297-304


• Kumano, G., Yokosawa, H. and Nishida, H.
• Biochemical evidence for membrane-bound endoderm-specific alkaline phosphatase in larvae of the ascidian, Halocynthia roretzi
• Eur. J. Biochem. 240, 485-489


• Nakatani, Y.,Yasuo, H., Satoh, N. and Nishida, H.
• Basic fibroblast growth factor induces notochord formation and the expression of As-T, a Brachyury homolog, during ascidian embryogenesis
• Development 122, 2023-2031


• Nishida, H.
• Vegetal egg cytoplasm promotes gastrulation and is responsible for specification of vegetal blastomeres in embryos of the ascidian Halocynthia roretzi
• Development 122, 1271-1279

1995

1994

• Nakatani, Y. and Nishida, H.
• Induction of notochord during ascidian embryogenesis
• Dev. Biol. 166, 289-299


• Nishida, H.
• Localization of determinants for formation of the anterior-posterior axis in eggs of the ascidian Halocynthia roretzi
• Development 120, 3093-3104


• Nishida, H.
• Localization of egg cytoplasm that promotes differentiation to epidermis in embryos of the ascidian Halocynthia roretzi
• Development 120, 235-243

1993

• Nishida, H.
• Localized regions of egg cytoplasm that promote expression of endoderm-specific alkaline phasphatase in embryos of ascidian Halocynthia roretzi
• Development 118, 1-7

1992

• Nishida, H.
• Regionality of egg cytoplasm that promotes muscle differentiation in ascidian, Halocynthia roretzi
• Development 116, 521-529


• Nishida, H.
• Developmental potential for tissue differentiation of fully dissociated cells of the ascidian embryos
• Roux's Arch. Dev. Biol. 201, 81-87

1991

• Nishida, H.
• Induction of brain and sensory pigment cells in the ascidian embryo analyzed by experiments with isolate blastomeres
• Development 112, 389-395

1990

• Nishida, H.
• Determinative mechanisms in secondary muscle lineages of ascidian embryos: development of muscle-specific features in isolated muscle progenitor cells
• Development 108, 559-568

Reviews etc.

• Negishi, T. and Nishida, H.
  Asymmetric and unequal cell divisions in ascidian embryos.
  Asymmetric Cell Division in Development, Differentiation and Cancer in Results and Problems in Cell Differentiation(2017) (Springer) 61, 261-284. doi: 10.1007/978-3-319-53150-2_12.
  
  Yamada, A., and Nishida, H.
  Control of the number of cell division rounds in distinct tissues during ascidian embryogenesis.
  Dev. Growth Differ. (2014) 56(5):376-86.
  
  Nishida, H and Stach, T.
  Cell lineages and fate maps in tunicates: Conservation and modification.
  Zool. Sci. (2014) 31(10):645-52.
  
  Nishida, H.
  The maternal muscle determinant in the ascidian egg.
  WIREs Dev. Biol. (2012). 1, 425-433.
  
  Makabe, K., and Nishida, H.
  Cytoplasmic localization and reorganization in ascidian eggs: Role of postplasmic/PEM RNAs in axis formation and fate determination.
  WIREs Dev. Biol.(2012). 1, 501-518.
  
  G.Kumano.
  Polarizing animal cells via mRNA localization in oogenesis and early development.
  Dev. Growth Differ.(2011) 54, 1-18.
  
  Nishida, H., Satoh, N., and Hirose, E.
  More diversity and more convergence in tunicate biology.
  Zool. Sci.(2010) 27, 67-68.
  
  Sardet, C., Swalla, B. J., Satoh, N., Sasakura, Y., Branno, M., Thompson, E. M., Levine, M., and Nishida, H.
  Meeting review. Euro chordates: Ascidian community swims ahead.
  Dev. Dynam.(2008) 237, 1207-1213.
  
  Nishida, H.
  Development of the appendicularian Oikopleura dioica: culture, genome, and cell lineages.
  Dev. Growth Differ. (2008) 50, S239-S256.
  
  Lemaire, P., Smith, W. C., and Nishida, H.
  Ascidians and the plasticity of the chordate developmental program.
  Curr. Biol.(2008) 18, R620-R631.
  


• Kumano G, Nishida H.
• Ascidian embryonic development: An emerging model system for the study of cell fate specification in chordates.
• Developmental Dynamics(2007). 236, 1732-1747.


• Nishida H
• Review: Specification of embryonic axis and mosaic development in ascidians.
• Dev Dyn. (2005) Aug;233(4):1177-93.


• Nishida, H.
• Review: The zoological society prize: Analysis of cell fate specification during ascidian early embryogenesis
• Zool. Sci. 20:1495-1496 (2003)


• Kumano, G. and Smith, W. C.
• Revisions to the Xenopus gastrula fate map: implications for mesoderm induction and patterning.
• Dev. Dyn. (2002). 225, 409-421.


• Nishida, H.
• Review: Patterning the marginal zone of early ascidian embryos: Localized maternal mRNA and inductive interactions
• BioEssays 24:613-624 (2002)


• Nishida, H.
• Review: Specification of developmental fates in ascidian embryos: Recent advances in molecular approach to maternal determinants and signaling molecules
• Int. Rev. Cytol. 217,227-76 (2002)


• Nishida, H., Morokuma, J., Nishikata, T.
• Review: Maternal cytoplasmic factors for generation of unequal cleavage patterns in animal embryos
• Curr. Top. in Dev. Biol. 46, 1-37 (1999)


• Nishida, H., Makabe, KW.
• Proceeding: Maternal information and localized maternal mRNA in eggs and early embryos of the ascidian Halocynthia roretzi
• Invert. Rep. and Dev. 36, 41-49 (1999)


• Nishida, H.
• Review: Cell lineage and timing of fate restriction, determination and gene expression in ascidian embryos
• Seminars in Cell and Developmental Biology 8, 359-365 (1997)


• Nishida, H.
• Review: Cell-fate specification by localized cytoplasmic determinants and cell interactions in ascidian embryos
• International Review of Cytology 176, 245-306 (1997)


• Nishida, H.
• Essay: Determination at the last cell cycle before fate restriction
• Zool. Sci. 13, 15-20 (1996)


• Nishida, H.
• Review: Determination of developmental fates of blastomeres in ascidian embryos
• Dev. Growth Differ. 34, 253-262 (1992)